1 Response_reg#1
7-120 aa · 114 aa · 46.3% of protein
Raw token
Response_reg:7:0.0000000000000332:120:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ24_RS00525
Response regulator LytTR family
Blautia faecis · GCF_020537665
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537665#LIQ24_RS00525Stable P2CS identifier used across views.
GenomeGCF_020537665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 246 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-229 aa · 85 aa · 34.6% of protein
Raw token
LytTR:145:0.00000000000000327:229:90:98- Raw architecture: Response_reg:7:0.0000000000000332:120:117:111#LytTR:145:0.00000000000000327:229:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537665::NZ_JAJBMY010000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span121956-122696Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ24_00525RefSeq proteinWP_178090577.1
Context group ID
GCF_020537665::NZ_JAJBMY010000001.1::G00007Context members
LIQ24_RS00525
Partner locus tags
LIQ24_RS00525
Partner old locus tags
LIQ24_00525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178090577.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ24_RS00525Primary locus identifier stored in the genes table.
Old locus tagLIQ24_00525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMY010000001.1Sequence record reported by the local genomic context database.
Genomic interval121 956-122 696 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span121 956-122 696 ntGCF_020537665::NZ_JAJBMY010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537665::NZ_JAJBMY010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span121 956-122 696 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 956 nt122 696 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ24_RS00525GCF_020537665#LIQ24_RS00525
RRLytTRCurrent focus
121 956-122 696 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS10860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0641433
Simplified PFAM architecture for RROC_0641433
PFAM domain coverage: 193 / 263 aa (73.4%)
1 aa263 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[30-136] | LytTR[160-245]
- Domain count: 2
- Matched identifier: RROC_0641433
- Positioned domains: Response_reg 30-136 ; LytTR 160-245
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS10860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_020537665
AssemblyASM2053766v1 · Contighaploid
Genome composition4 798 446 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 166 · HK 83 · RR 80CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key