1 Response_reg#1
3-112 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:3:8.09e-36:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS08815
Response regulator OmpR family
Ruminococcus sp. AM42-11 · GCF_003480145
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480145#DW904_RS08815Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-221 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:150:2e-22:221:73:77- Raw architecture: Response_reg:3:8.09e-36:112:110:111#Trans_reg_C:150:2e-22:221:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480145::NZ_QUIO01000012.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22327-23004Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_08815RefSeq proteinWP_118579423.1
Context group ID
GCF_003480145::NZ_QUIO01000012.1::G00020Context members
DW904_RS08815
Partner locus tags
DW904_RS08815
Partner old locus tags
DW904_08815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118579423.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2HAG7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2HAG7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS08815Primary locus identifier stored in the genes table.
Old locus tagDW904_08815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000012.1Sequence record reported by the local genomic context database.
Genomic interval22 327-23 004 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 327-23 004 ntGCF_003480145::NZ_QUIO01000012.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000012.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000012.1All displayed genes belong to this local TCS context.
Neighborhood span22 327-23 004 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 327 nt23 004 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW904_RS08815GCF_003480145#DW904_RS08815
RROmpRCurrent focus
22 327-23 004 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS08815The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1480033
Simplified PFAM architecture for RROC_1480033
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1480033
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS08815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key