1 Response_reg#1
5-117 aa · 113 aa · 45.7% of protein
Raw token
Response_reg:5:1.22e-31:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS00210
Response regulator, unclassified
Ruminococcus sp. AM42-11 · GCF_003480145
ClassRRTypeunclassifiedLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480145#DW904_RS00210Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 247 aa (76.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
155-195 aa · 41 aa · 16.6% of protein
Raw token
HTH_AraC:155:0.00000000564:195:41:423 HTH_AraC#3
212-246 aa · 35 aa · 14.2% of protein
Raw token
HTH_AraC:212:0.000000000308:246:35:42- Raw architecture: Response_reg:5:1.22e-31:117:113:111#HTH_AraC:155:0.00000000564:195:41:42#HTH_AraC:212:0.000000000308:246:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480145::NZ_QUIO01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span47640-48383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_00210RefSeq proteinWP_118577578.1
Context group ID
GCF_003480145::NZ_QUIO01000001.1::G00003Context members
DW904_RS00210
Partner locus tags
DW904_RS00210
Partner old locus tags
DW904_00210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118577578.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS00210Primary locus identifier stored in the genes table.
Old locus tagDW904_00210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000001.1Sequence record reported by the local genomic context database.
Genomic interval47 640-48 383 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 640-48 383 ntGCF_003480145::NZ_QUIO01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span47 640-48 383 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 640 nt48 383 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW904_RS00210GCF_003480145#DW904_RS00210
RRunclassifiedCurrent focus
47 640-48 383 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS00210The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0759575
Simplified PFAM architecture for RROC_0759575
PFAM domain coverage: 192 / 247 aa (77.7%)
1 aa247 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[168-246]
- Domain count: 2
- Matched identifier: RROC_0759575
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 168-246 ; HTH_18 168-246
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS00210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key