1 Response_reg#1
5-117 aa · 113 aa · 21.0% of protein
Raw token
Response_reg:5:6.61e-29:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS00520
Response regulator, unclassified
Ruminococcus sp. AM42-11 · GCF_003480145
ClassRRTypeunclassifiedLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480145#DW904_RS00520Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 537 aa (34.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-485 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:444:0.000000288:485:42:423 HTH_AraC#3
505-535 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:505:0.00000155:535:31:42- Raw architecture: Response_reg:5:6.61e-29:117:113:111#HTH_AraC:444:0.000000288:485:42:42#HTH_AraC:505:0.00000155:535:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480145::NZ_QUIO01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119596-122986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_00520RefSeq proteinWP_118577628.1
Context group ID
GCF_003480145::NZ_QUIO01000001.1::G00005Context members
DW904_RS00520DW904_RS00525
Partner locus tags
DW904_RS00520DW904_RS00525
Partner old locus tags
DW904_00520DW904_00525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118577628.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS00520Primary locus identifier stored in the genes table.
Old locus tagDW904_00520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000001.1Sequence record reported by the local genomic context database.
Genomic interval119 596-121 209 nt1 614 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 596-122 986 ntGCF_003480145::NZ_QUIO01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span119 596-122 986 nt3 391 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 596 nt122 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW904_RS00520GCF_003480145#DW904_RS00520
RRunclassifiedCurrent focus
119 596-121 209 nt · Reverse (-)
DW904_RS00525GCF_003480145#DW904_RS00525
HKClassic
121 181-122 986 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS00520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0096725
Simplified PFAM architecture for RROC_0096725
PFAM domain coverage: 190 / 537 aa (35.4%)
1 aa537 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[457-535]
- Domain count: 2
- Matched identifier: RROC_0096725
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 457-535 ; HTH_18 457-535
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS00520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key