1 Response_reg#1
3-113 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:3:4.4e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS00995
Response regulator OmpR family
Ruminococcus sp. AM42-11 · GCF_003480145
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480145#DW904_RS00995Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:4.89e-24:220:78:77- Raw architecture: Response_reg:3:4.4e-38:113:111:111#Trans_reg_C:145:4.89e-24:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480145::NZ_QUIO01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span228922-230765Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_00995RefSeq proteinWP_118577702.1
Context group ID
GCF_003480145::NZ_QUIO01000001.1::G00007Context members
DW904_RS00995DW904_RS01000
Partner locus tags
DW904_RS00995DW904_RS01000
Partner old locus tags
DW904_00995DW904_01000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118577702.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS00995Primary locus identifier stored in the genes table.
Old locus tagDW904_00995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000001.1Sequence record reported by the local genomic context database.
Genomic interval228 922-229 596 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span228 922-230 765 ntGCF_003480145::NZ_QUIO01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span228 922-230 765 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
228 922 nt230 765 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW904_RS00995GCF_003480145#DW904_RS00995
RROmpRCurrent focus
228 922-229 596 nt · Forward (+)
DW904_RS01000GCF_003480145#DW904_RS01000
HKClassic
229 593-230 765 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS00995The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543508
Simplified PFAM architecture for RROC_1543508
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1543508
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS00995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key