1 CHASE#1
110-222 aa · 113 aa · 16.5% of protein
Raw token
CHASE:110:0.00000000000101:222:122:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW904_RS02105
Histidine kinase, Hybrid
Ruminococcus sp. AM42-11 · GCF_003480145
ClassHKTypeHybridLength686 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480145#DW904_RS02105Stable P2CS identifier used across views.
GenomeGCF_003480145Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length686 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage412 / 686 aa (60.1%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa686 aa
Domain-by-domain annotation4 items
2 HisKA#2
309-375 aa · 67 aa · 9.8% of protein
Raw token
HisKA:309:2.06e-17:375:67:643 HATPase_c#3
422-539 aa · 118 aa · 17.2% of protein
Raw token
HATPase_c:422:3.78e-30:539:118:1094 Response_reg#4
565-678 aa · 114 aa · 16.6% of protein
Raw token
Response_reg:565:3.56e-28:678:114:111- Raw architecture: CHASE:110:0.00000000000101:222:122:183#HisKA:309:2.06e-17:375:67:64#HATPase_c:422:3.78e-30:539:118:109#Response_reg:565:3.56e-28:678:114:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480145::NZ_QUIO01000002.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span84460-86520Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW904_02105RefSeq proteinWP_118577854.1
Context group ID
GCF_003480145::NZ_QUIO01000002.1::G00034Context members
DW904_RS02105
Partner locus tags
DW904_RS02105
Partner old locus tags
DW904_02105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118577854.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW904_RS02105Primary locus identifier stored in the genes table.
Old locus tagDW904_02105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIO01000002.1Sequence record reported by the local genomic context database.
Genomic interval84 460-86 520 nt2 061 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 460-86 520 ntGCF_003480145::NZ_QUIO01000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480145::NZ_QUIO01000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span84 460-86 520 nt2 061 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 460 nt86 520 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW904_RS02105GCF_003480145#DW904_RS02105
HKHybridCurrent focus
84 460-86 520 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS02105The current gene is the representative for this cluster.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0801534
Simplified PFAM architecture for HKOC_0801534
PFAM domain coverage: 408 / 686 aa (59.5%)
1 aa686 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[109-219] | HisKA[309-375] | HATPase_c[422-536] | Response_reg[565-679]
- Domain count: 4
- Matched identifier: HKOC_0801534
- Positioned domains: CHASE 109-219 ; HisKA 309-375 ; HATPase_c 422-536 ; Response_reg 565-679
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS02105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 372 · GCF_003480145
AssemblyASM348014v1 · Contighaploid
Genome composition4 698 861 bp · 42,5% GCRuminococcus sp. AM42-11
Signal transduction countsGenes 130 · HK 64 · RR 63CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key