1 Response_reg#1
15-132 aa · 118 aa · 86.8% of protein
Raw token
Response_reg:15:3.57e-29:132:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS08150
Response regulator, CheY family
Coprococcus comes · GCF_001404595
ClassRRTypeCheYLength136 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404595#AQ998_RS08150Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length136 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage118 / 136 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa136 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:15:3.57e-29:132:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404595::NZ_CYYN01000009.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span134168-134578Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_01665RefSeq proteinWP_055248025.1
Context group ID
GCF_001404595::NZ_CYYN01000009.1::G00018Context members
AQ998_RS08150
Partner locus tags
AQ998_RS08150
Partner old locus tags
ERS852389_01665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055248025.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AHR0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AHR0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS08150Primary locus identifier stored in the genes table.
Old locus tagERS852389_01665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000009.1Sequence record reported by the local genomic context database.
Genomic interval134 168-134 578 nt411 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span134 168-134 578 ntGCF_001404595::NZ_CYYN01000009.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000009.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000009.1All displayed genes belong to this local TCS context.
Neighborhood span134 168-134 578 nt411 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 168 nt134 578 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ998_RS08150GCF_001404595#AQ998_RS08150
RRCheYCurrent focus
134 168-134 578 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS08150The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2283638
Simplified PFAM architecture for RROC_2283638
PFAM domain coverage: 117 / 136 aa (86.0%)
1 aa136 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[15-131]
- Domain count: 1
- Matched identifier: RROC_2283638
- Positioned domains: Response_reg 15-131 ; Response_reg 15-131
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS08150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key