1 Response_reg#1
6-121 aa · 116 aa · 44.4% of protein
Raw token
Response_reg:6:8.69e-21:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS04005
Response regulator Spo0A family
Coprococcus comes · GCF_001404595
ClassRRTypeSpo0ALength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404595#AQ998_RS04005Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 261 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
151-254 aa · 104 aa · 39.8% of protein
Raw token
Spo0A_C:151:1.22e-62:254:104:104- Raw architecture: Response_reg:6:8.69e-21:121:116:111#Spo0A_C:151:1.22e-62:254:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404595::NZ_CYYN01000004.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span146465-147250Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_00821RefSeq proteinWP_055247075.1
Context group ID
GCF_001404595::NZ_CYYN01000004.1::G00006Context members
AQ998_RS04005
Partner locus tags
AQ998_RS04005
Partner old locus tags
ERS852389_00821
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055247075.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XZT6Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XZT6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS04005Primary locus identifier stored in the genes table.
Old locus tagERS852389_00821Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000004.1Sequence record reported by the local genomic context database.
Genomic interval146 465-147 250 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 465-147 250 ntGCF_001404595::NZ_CYYN01000004.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000004.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000004.1All displayed genes belong to this local TCS context.
Neighborhood span146 465-147 250 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 465 nt147 250 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ998_RS04005GCF_001404595#AQ998_RS04005
RRSpo0ACurrent focus
146 465-147 250 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS04005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648938
Simplified PFAM architecture for RROC_0648938
PFAM domain coverage: 220 / 261 aa (84.3%)
1 aa261 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-121] | Spo0A_C[151-254]
- Domain count: 2
- Matched identifier: RROC_0648938
- Positioned domains: Response_reg 6-121 ; Response_reg 6-121 ; Spo0A_C 151-254 ; Spo0A_C 151-254
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS04005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key