1 HisKA#1
230-293 aa · 64 aa · 14.0% of protein
Raw token
HisKA:230:0.0000000000015:293:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS02410
Histidine kinase, Classic
Coprococcus comes · GCF_001404595
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS02410Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 456 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-455 aa · 113 aa · 24.8% of protein
Raw token
HATPase_c:343:4.69e-22:455:113:109- Raw architecture: HisKA:230:0.0000000000015:293:64:64#HATPase_c:343:4.69e-22:455:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000003.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18016-20078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_00491RefSeq proteinWP_005927602.1
Context group ID
GCF_001404595::NZ_CYYN01000003.1::G00003Context members
AQ998_RS02410AQ998_RS02415
Partner locus tags
AQ998_RS02410AQ998_RS02415
Partner old locus tags
ERS852389_00491ERS852389_00492
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005927602.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A6Z9S2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A6Z9S2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS02410Primary locus identifier stored in the genes table.
Old locus tagERS852389_00491Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000003.1Sequence record reported by the local genomic context database.
Genomic interval18 016-19 386 nt1 371 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 016-20 078 ntGCF_001404595::NZ_CYYN01000003.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000003.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000003.1All displayed genes belong to this local TCS context.
Neighborhood span18 016-20 078 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 016 nt20 078 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS02410GCF_001404595#AQ998_RS02410
HKClassicCurrent focus
18 016-19 386 nt · Reverse (-)
AQ998_RS02415GCF_001404595#AQ998_RS02415
RROmpR
19 383-20 078 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS13610Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1887707
Simplified PFAM architecture for HKOC_1887707
PFAM domain coverage: 176 / 456 aa (38.6%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[230-293] | HATPase_c[343-454]
- Domain count: 2
- Matched identifier: HKOC_1887707
- Positioned domains: HisKA 230-293 ; HATPase_c 343-454
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS13610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key