1 Response_reg#1
5-112 aa · 108 aa · 47.2% of protein
Raw token
Response_reg:5:1.39e-38:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS01320
Response regulator OmpR family
Coprococcus comes · GCF_001404595
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS01320Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:2.98e-36:227:77:77- Raw architecture: Response_reg:5:1.39e-38:112:109:111#Trans_reg_C:151:2.98e-36:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42985-45100Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_00272RefSeq proteinWP_008374691.1
Context group ID
GCF_001404595::NZ_CYYN01000002.1::G00002Context members
AQ998_RS01315AQ998_RS01320
Partner locus tags
AQ998_RS01315AQ998_RS01320
Partner old locus tags
ERS852389_00271ERS852389_00272
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008374691.1Primary protein accession used for annex mappings.
UniProt accessionC0BAZ2Primary UniProt accession resolved in the annex database.
UniProt IDC0BAZ2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS01320Primary locus identifier stored in the genes table.
Old locus tagERS852389_00272Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000002.1Sequence record reported by the local genomic context database.
Genomic interval44 411-45 100 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 985-45 100 ntGCF_001404595::NZ_CYYN01000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span42 985-45 100 nt2 116 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 985 nt45 100 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS01315GCF_001404595#AQ998_RS01315
HKClassic
42 985-44 322 nt · Reverse (-)
AQ998_RS01320GCF_001404595#AQ998_RS01320
RROmpRCurrent focus
44 411-45 100 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS01320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253437
Simplified PFAM architecture for RROC_1253437
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1253437
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS01320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key