1 sCache_2#1
1-102 aa · 102 aa · 19.0% of protein
Raw token
sCache_2:1:0.0000204:102:106:152P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS00525
Histidine kinase, Hybrid
Coprococcus comes · GCF_001404595
ClassHKTypeHybridLength536 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404595#AQ998_RS00525Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
sCache_2HisKAHATPase_cResponse_reg
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage400 / 536 aa (74.6%)Merged over positioned domains only.
Domain description1 sCache_2,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation4 items
2 HisKA#2
168-229 aa · 62 aa · 11.6% of protein
Raw token
HisKA:168:0.000000026:229:62:643 HATPase_c#3
275-399 aa · 125 aa · 23.3% of protein
Raw token
HATPase_c:275:4.24e-26:399:126:1094 Response_reg#4
419-529 aa · 111 aa · 20.7% of protein
Raw token
Response_reg:419:0.00000000000242:529:113:111- Raw architecture: sCache_2:1:0.0000204:102:106:152#HisKA:168:0.000000026:229:62:64#HATPase_c:275:4.24e-26:399:126:109#Response_reg:419:0.00000000000242:529:113:111
- Domain description: 1 sCache_2,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404595::NZ_CYYN01000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span122068-123678Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_00109RefSeq proteinWP_330376173.1
Context group ID
GCF_001404595::NZ_CYYN01000001.1::G00001Context members
AQ998_RS00525
Partner locus tags
AQ998_RS00525
Partner old locus tags
ERS852389_00109
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330376173.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS00525Primary locus identifier stored in the genes table.
Old locus tagERS852389_00109Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000001.1Sequence record reported by the local genomic context database.
Genomic interval122 068-123 678 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span122 068-123 678 ntGCF_001404595::NZ_CYYN01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span122 068-123 678 nt1 611 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 068 nt123 678 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ998_RS00525GCF_001404595#AQ998_RS00525
HKHybridCurrent focus
122 068-123 678 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS00525The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1334413
Simplified PFAM architecture for HKOC_1334413
PFAM domain coverage: 297 / 536 aa (55.4%)
1 aa536 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[169-230] | HATPase_c[276-399] | Response_reg[419-529]
- Domain count: 3
- Matched identifier: HKOC_1334413
- Positioned domains: HisKA 169-230 ; HATPase_c 276-399 ; Response_reg 419-529
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS00525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key