1 Response_reg#1
3-116 aa · 114 aa · 21.4% of protein
Raw token
Response_reg:3:2.81e-32:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS07390
Response regulator, unclassified
Coprococcus comes · GCF_001404595
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS07390Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage197 / 532 aa (37.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-477 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:436:0.000000327:477:42:423 HTH_AraC#3
486-526 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:486:0.000000000277:526:41:42- Raw architecture: Response_reg:3:2.81e-32:116:114:111#HTH_AraC:436:0.000000327:477:42:42#HTH_AraC:486:0.000000000277:526:41:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000008.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119513-122577Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_01514RefSeq proteinWP_055247856.1
Context group ID
GCF_001404595::NZ_CYYN01000008.1::G00015Context members
AQ998_RS07385AQ998_RS07390
Partner locus tags
AQ998_RS07385AQ998_RS07390
Partner old locus tags
ERS852389_01513ERS852389_01514
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055247856.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37QGL2Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37QGL2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS07390Primary locus identifier stored in the genes table.
Old locus tagERS852389_01514Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000008.1Sequence record reported by the local genomic context database.
Genomic interval120 979-122 577 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 513-122 577 ntGCF_001404595::NZ_CYYN01000008.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000008.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000008.1All displayed genes belong to this local TCS context.
Neighborhood span119 513-122 577 nt3 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 513 nt122 577 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS07385GCF_001404595#AQ998_RS07385
HKClassic
119 513-120 982 nt · Forward (+)
AQ998_RS07390GCF_001404595#AQ998_RS07390
RRunclassifiedCurrent focus
120 979-122 577 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS07390The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107989
Simplified PFAM architecture for RROC_0107989
PFAM domain coverage: 309 / 532 aa (58.1%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[3-115] | GGDEF_2[177-294] | HTH_18[450-527]
- Domain count: 3
- Matched identifier: RROC_0107989
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; GGDEF_2 177-294 ; GGDEF_2 177-294 ; HTH_18 450-527 ; HTH_18 450-527
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS07390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key