1 Response_reg#1
8-116 aa · 109 aa · 20.5% of protein
Raw token
Response_reg:8:5.63e-26:116:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS06585
Response regulator, unclassified
Coprococcus comes · GCF_001404595
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS06585Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 532 aa (34.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-477 aa · 40 aa · 7.5% of protein
Raw token
HTH_AraC:438:0.0000946:477:40:423 HTH_AraC#3
495-526 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:495:0.000000911:526:32:42- Raw architecture: Response_reg:8:5.63e-26:116:109:111#HTH_AraC:438:0.0000946:477:40:42#HTH_AraC:495:0.000000911:526:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000007.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96304-99680Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_01348RefSeq proteinWP_055156077.1
Context group ID
GCF_001404595::NZ_CYYN01000007.1::G00011Context members
AQ998_RS06585AQ998_RS06590
Partner locus tags
AQ998_RS06585AQ998_RS06590
Partner old locus tags
ERS852389_01348ERS852389_01349
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055156077.1Primary protein accession used for annex mappings.
UniProt accessionA0A173S5C8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173S5C8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS06585Primary locus identifier stored in the genes table.
Old locus tagERS852389_01348Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000007.1Sequence record reported by the local genomic context database.
Genomic interval96 304-97 902 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 304-99 680 ntGCF_001404595::NZ_CYYN01000007.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000007.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000007.1All displayed genes belong to this local TCS context.
Neighborhood span96 304-99 680 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 304 nt99 680 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS06585GCF_001404595#AQ998_RS06585
RRunclassifiedCurrent focus
96 304-97 902 nt · Forward (+)
AQ998_RS06590GCF_001404595#AQ998_RS06590
HKClassic
97 899-99 680 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS06585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107988
Simplified PFAM architecture for RROC_0107988
PFAM domain coverage: 294 / 532 aa (55.3%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[7-118] | GGDEF_2[183-286] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0107988
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GGDEF_2 183-286 ; GGDEF_2 183-286 ; HTH_18 451-528 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS06585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key