1 Response_reg#1
7-117 aa · 111 aa · 52.9% of protein
Raw token
Response_reg:7:1.46e-28:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS16665
Response regulator, unclassified
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeunclassifiedLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS16665Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 210 aa (52.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:1.46e-28:117:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159675.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span294101-296136Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01883RefSeq proteinWP_016316564.1
Context group ID
GCF_000403395::NZ_KE159675.1::G00028Context members
C814_RS16660C814_RS16665
Partner locus tags
C814_RS16660C814_RS16665
Partner old locus tags
C814_01882C814_01883
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316564.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS16665Primary locus identifier stored in the genes table.
Old locus tagC814_01883Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159675.1Sequence record reported by the local genomic context database.
Genomic interval295 504-296 136 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span294 101-296 136 ntGCF_000403395::NZ_KE159675.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159675.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159675.1All displayed genes belong to this local TCS context.
Neighborhood span294 101-296 136 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
294 101 nt296 136 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS16660GCF_000403395#C814_RS16660
HKClassic
294 101-295 507 nt · Forward (+)
C814_RS16665GCF_000403395#C814_RS16665
RRunclassifiedCurrent focus
295 504-296 136 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS16665The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_2019948
Simplified PFAM architecture for RROC_2019948
PFAM domain coverage: 172 / 210 aa (81.9%)
1 aa210 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[7-117] | HTH_64[147-207]
- Domain count: 2
- Matched identifier: RROC_2019948
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HTH_64 147-207 ; HTH_64 147-207
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS16665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key