1 dCache_1#1
150-288 aa · 139 aa · 23.0% of protein
Raw token
dCache_1:150:0.000000000000014:288:143:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS06495
Histidine kinase, Classic
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS06495Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage396 / 605 aa (65.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-374 aa · 70 aa · 11.6% of protein
Raw token
HAMP:305:0.00000521:374:70:693 His_kinase#3
389-468 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:389:5.87e-34:468:80:804 HATPase_c#4
484-590 aa · 107 aa · 17.7% of protein
Raw token
HATPase_c:484:3.32e-18:590:109:109- Raw architecture: dCache_1:150:0.000000000000014:288:143:195#HAMP:305:0.00000521:374:70:69#His_kinase:389:5.87e-34:468:80:80#HATPase_c:484:3.32e-18:590:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159657.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101198-104797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_00106RefSeq proteinWP_016314825.1
Context group ID
GCF_000403395::NZ_KE159657.1::G00001Context members
C814_RS06490C814_RS06495
Partner locus tags
C814_RS06490C814_RS06495
Partner old locus tags
C814_00105C814_00106
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016314825.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS06495Primary locus identifier stored in the genes table.
Old locus tagC814_00106Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159657.1Sequence record reported by the local genomic context database.
Genomic interval102 980-104 797 nt1 818 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 198-104 797 ntGCF_000403395::NZ_KE159657.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159657.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159657.1All displayed genes belong to this local TCS context.
Neighborhood span101 198-104 797 nt3 600 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 198 nt104 797 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS06490GCF_000403395#C814_RS06490
RRunclassified
101 198-102 784 nt · Forward (+)
C814_RS06495GCF_000403395#C814_RS06495
HKClassicCurrent focus
102 980-104 797 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS06495The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1028540
Simplified PFAM architecture for HKOC_1028540
PFAM domain coverage: 420 / 605 aa (69.4%)
1 aa605 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[55-287] | His_kinase[390-468] | HATPase_c[484-591]
- Domain count: 3
- Matched identifier: HKOC_1028540
- Positioned domains: dCache_1 55-287 ; His_kinase 390-468 ; HATPase_c 484-591
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS06495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key