1 Response_reg#1
6-119 aa · 114 aa · 21.6% of protein
Raw token
Response_reg:6:1.19e-28:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS06490
Response regulator, unclassified
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeunclassifiedLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS06490Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 528 aa (35.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
435-477 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:435:0.0000000112:477:43:423 HTH_AraC#3
498-526 aa · 29 aa · 5.5% of protein
Raw token
HTH_AraC:498:0.00000267:526:29:42- Raw architecture: Response_reg:6:1.19e-28:119:114:111#HTH_AraC:435:0.0000000112:477:43:42#HTH_AraC:498:0.00000267:526:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159657.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101198-104797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_00105RefSeq proteinWP_016314824.1
Context group ID
GCF_000403395::NZ_KE159657.1::G00001Context members
C814_RS06490C814_RS06495
Partner locus tags
C814_RS06490C814_RS06495
Partner old locus tags
C814_00105C814_00106
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016314824.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS06490Primary locus identifier stored in the genes table.
Old locus tagC814_00105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159657.1Sequence record reported by the local genomic context database.
Genomic interval101 198-102 784 nt1 587 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 198-104 797 ntGCF_000403395::NZ_KE159657.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159657.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159657.1All displayed genes belong to this local TCS context.
Neighborhood span101 198-104 797 nt3 600 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 198 nt104 797 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS06490GCF_000403395#C814_RS06490
RRunclassifiedCurrent focus
101 198-102 784 nt · Forward (+)
C814_RS06495GCF_000403395#C814_RS06495
HKClassic
102 980-104 797 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS06490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0114565
Simplified PFAM architecture for RROC_0114565
PFAM domain coverage: 321 / 528 aa (60.8%)
1 aa528 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[160-289] | HTH_18[449-526]
- Domain count: 3
- Matched identifier: RROC_0114565
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 160-289 ; GGDEF_2 160-289 ; HTH_18 449-526 ; HTH_18 449-526
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS06490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key