1 Response_reg#1
4-117 aa · 114 aa · 51.6% of protein
Raw token
Response_reg:4:1.02e-18:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS07370
Response regulator NarL family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeNarLLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000403395#C814_RS07370Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 221 aa (76.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-211 aa · 54 aa · 24.4% of protein
Raw token
HTH_LUXR:158:0.00000272:211:54:58- Raw architecture: Response_reg:4:1.02e-18:117:114:111#HTH_LUXR:158:0.00000272:211:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000403395::NZ_KE159657.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span311272-311937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_00290RefSeq proteinWP_016315008.1
Context group ID
GCF_000403395::NZ_KE159657.1::G00004Context members
C814_RS07370
Partner locus tags
C814_RS07370
Partner old locus tags
C814_00290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016315008.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS07370Primary locus identifier stored in the genes table.
Old locus tagC814_00290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159657.1Sequence record reported by the local genomic context database.
Genomic interval311 272-311 937 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span311 272-311 937 ntGCF_000403395::NZ_KE159657.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159657.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159657.1All displayed genes belong to this local TCS context.
Neighborhood span311 272-311 937 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
311 272 nt311 937 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C814_RS07370GCF_000403395#C814_RS07370
RRNarLCurrent focus
311 272-311 937 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS07370The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1679353
Simplified PFAM architecture for RROC_1679353
PFAM domain coverage: 114 / 221 aa (51.6%)
1 aa221 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-117]
- Domain count: 1
- Matched identifier: RROC_1679353
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS07370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key