1 CheW#1
19-156 aa · 138 aa · 44.1% of protein
Raw token
CheW:19:5.8e-29:156:139:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS07295
Response regulator CheV family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeCheVLength313 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000403395#C814_RS07295Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage260 / 313 aa (83.1%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 Response_reg#2
179-300 aa · 122 aa · 39.0% of protein
Raw token
Response_reg:179:1.6e-20:300:123:111- Raw architecture: CheW:19:5.8e-29:156:139:138#Response_reg:179:1.6e-20:300:123:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000403395::NZ_KE159657.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span293698-294639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_00273RefSeq proteinWP_016314991.1
Context group ID
GCF_000403395::NZ_KE159657.1::G00003Context members
C814_RS07295
Partner locus tags
C814_RS07295
Partner old locus tags
C814_00273
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016314991.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS07295Primary locus identifier stored in the genes table.
Old locus tagC814_00273Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159657.1Sequence record reported by the local genomic context database.
Genomic interval293 698-294 639 nt942 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span293 698-294 639 ntGCF_000403395::NZ_KE159657.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159657.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159657.1All displayed genes belong to this local TCS context.
Neighborhood span293 698-294 639 nt942 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
293 698 nt294 639 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C814_RS07295GCF_000403395#C814_RS07295
RRCheVCurrent focus
293 698-294 639 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS07295The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0544010
Simplified PFAM architecture for RROC_0544010
PFAM domain coverage: 255 / 313 aa (81.5%)
1 aa313 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[20-154] | Response_reg[179-298]
- Domain count: 2
- Matched identifier: RROC_0544010
- Positioned domains: CheW 20-154 ; CheW 20-154 ; Response_reg 179-298 ; Response_reg 179-298
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS07295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key