1 HAMP#1
104-164 aa · 61 aa · 15.6% of protein
Raw token
HAMP:104:0.0000000000179:164:61:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS14030
Histidine kinase, Classic
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS14030Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 392 aa (57.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
177-240 aa · 64 aa · 16.3% of protein
Raw token
HisKA:177:0.00000000000235:240:64:643 HATPase_c#3
286-385 aa · 100 aa · 25.5% of protein
Raw token
HATPase_c:286:8.68e-23:385:104:109- Raw architecture: HAMP:104:0.0000000000179:164:61:69#HisKA:177:0.00000000000235:240:64:64#HATPase_c:286:8.68e-23:385:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159674.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54785-56625Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01310RefSeq proteinWP_016316002.1
Context group ID
GCF_000403395::NZ_KE159674.1::G00019Context members
C814_RS14030C814_RS14035
Partner locus tags
C814_RS14030C814_RS14035
Partner old locus tags
C814_01310C814_01311
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316002.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS14030Primary locus identifier stored in the genes table.
Old locus tagC814_01310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159674.1Sequence record reported by the local genomic context database.
Genomic interval54 785-55 963 nt1 179 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 785-56 625 ntGCF_000403395::NZ_KE159674.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159674.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159674.1All displayed genes belong to this local TCS context.
Neighborhood span54 785-56 625 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 785 nt56 625 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS14030GCF_000403395#C814_RS14030
HKClassicCurrent focus
54 785-55 963 nt · Reverse (-)
C814_RS14035GCF_000403395#C814_RS14035
RROmpR
55 951-56 625 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS14030The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2511710
Simplified PFAM architecture for HKOC_2511710
PFAM domain coverage: 210 / 392 aa (53.6%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[116-164] | HisKA[178-240] | HATPase_c[287-384]
- Domain count: 3
- Matched identifier: HKOC_2511710
- Positioned domains: HAMP 116-164 ; HisKA 178-240 ; HATPase_c 287-384
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS14030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key