1 Response_reg#1
4-119 aa · 116 aa · 47.5% of protein
Raw token
Response_reg:4:4.28e-18:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS13700
Response regulator LytTR family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000403395#C814_RS13700Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 244 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
159-232 aa · 74 aa · 30.3% of protein
Raw token
LytTR:159:0.00000000368:232:79:98- Raw architecture: Response_reg:4:4.28e-18:119:118:111#LytTR:159:0.00000000368:232:79:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000403395::NZ_KE159668.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span414957-415691Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01251RefSeq proteinWP_016297415.1
Context group ID
GCF_000403395::NZ_KE159668.1::G00018Context members
C814_RS13700
Partner locus tags
C814_RS13700
Partner old locus tags
C814_01251
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016297415.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS13700Primary locus identifier stored in the genes table.
Old locus tagC814_01251Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159668.1Sequence record reported by the local genomic context database.
Genomic interval414 957-415 691 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span414 957-415 691 ntGCF_000403395::NZ_KE159668.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159668.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159668.1All displayed genes belong to this local TCS context.
Neighborhood span414 957-415 691 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
414 957 nt415 691 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C814_RS13700GCF_000403395#C814_RS13700
RRLytTRCurrent focus
414 957-415 691 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS13700The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806799
Simplified PFAM architecture for RROC_0806799
PFAM domain coverage: 170 / 244 aa (69.7%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[37-119] | LytTR[146-232]
- Domain count: 2
- Matched identifier: RROC_0806799
- Positioned domains: Response_reg 37-119 ; Response_reg 37-119 ; LytTR 146-232 ; LytTR 146-232
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS13700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key