1 Hpt#1
10-76 aa · 67 aa · 9.6% of protein
Raw token
Hpt:10:0.000000000000196:76:67:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS11070
Histidine kinase, CheA
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassHKTypeCheALength698 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000403395#C814_RS11070Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
HptTonB_NH-kinase_dimHATPase_cCheW
Protein length698 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage470 / 698 aa (67.3%)Merged over positioned domains only.
Domain description1 Hpt,1 TonB_N,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa698 aa
Domain-by-domain annotation5 items
2 TonB_N#2
238-304 aa · 67 aa · 9.6% of protein
Raw token
TonB_N:238:0.00000342:304:67:1293 H-kinase_dim#3
305-366 aa · 62 aa · 8.9% of protein
Raw token
H-kinase_dim:305:1.05e-16:366:67:674 HATPase_c#4
414-552 aa · 139 aa · 19.9% of protein
Raw token
HATPase_c:414:1.77e-16:552:139:1095 CheW#5
557-691 aa · 135 aa · 19.3% of protein
Raw token
CheW:557:1.94e-18:691:138:138- Raw architecture: Hpt:10:0.000000000000196:76:67:84#TonB_N:238:0.00000342:304:67:129#H-kinase_dim:305:1.05e-16:366:67:67#HATPase_c:414:1.77e-16:552:139:109#CheW:557:1.94e-18:691:138:138
- Domain description: 1 Hpt,1 TonB_N,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000403395::NZ_KE159660.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span95677-97773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_03326RefSeq proteinWP_016317920.1
Context group ID
GCF_000403395::NZ_KE159660.1::G00012Context members
C814_RS11070
Partner locus tags
C814_RS11070
Partner old locus tags
C814_03326
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016317920.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS11070Primary locus identifier stored in the genes table.
Old locus tagC814_03326Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159660.1Sequence record reported by the local genomic context database.
Genomic interval95 677-97 773 nt2 097 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span95 677-97 773 ntGCF_000403395::NZ_KE159660.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159660.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159660.1All displayed genes belong to this local TCS context.
Neighborhood span95 677-97 773 nt2 097 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 677 nt97 773 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C814_RS11070GCF_000403395#C814_RS11070
HKCheACurrent focus
95 677-97 773 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS11070The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0773158
Simplified PFAM architecture for HKOC_0773158
PFAM domain coverage: 516 / 698 aa (73.9%)
1 aa698 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[10-111] | P2[165-244] | H-kinase_dim[305-366] | HATPase_c[415-552] | CheW[558-691]
- Domain count: 5
- Matched identifier: HKOC_0773158
- Positioned domains: Hpt 10-111 ; P2 165-244 ; H-kinase_dim 305-366 ; HATPase_c 415-552 ; CheW 558-691
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key