1 Response_reg#1
4-86 aa · 83 aa · 33.9% of protein
Raw token
Response_reg:4:0.0000000000937:86:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBHAL_RS01920
Response regulator LytTR family
Anaerobutyricum hallii DSM 3353 · GCF_000173975
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000173975#EUBHAL_RS01920Stable P2CS identifier used across views.
GenomeGCF_000173975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 245 aa (73.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-234 aa · 96 aa · 39.2% of protein
Raw token
LytTR:139:0.0000000000905:234:101:98- Raw architecture: Response_reg:4:0.0000000000937:86:84:111#LytTR:139:0.0000000000905:234:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000173975::NZ_ACEP01000029.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span47644-48381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBHAL_00439RefSeq proteinWP_044921505.1
Context group ID
GCF_000173975::NZ_ACEP01000029.1::G00040Context members
EUBHAL_RS01920
Partner locus tags
EUBHAL_RS01920
Partner old locus tags
EUBHAL_00439
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044921505.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ0BKT2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ0BKT2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBHAL_RS01920Primary locus identifier stored in the genes table.
Old locus tagEUBHAL_00439Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACEP01000029.1Sequence record reported by the local genomic context database.
Genomic interval47 644-48 381 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 644-48 381 ntGCF_000173975::NZ_ACEP01000029.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173975::NZ_ACEP01000029.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACEP01000029.1All displayed genes belong to this local TCS context.
Neighborhood span47 644-48 381 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 644 nt48 381 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBHAL_RS01920GCF_000173975#EUBHAL_RS01920
RRLytTRCurrent focus
47 644-48 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS01920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789544
Simplified PFAM architecture for RROC_0789544
PFAM domain coverage: 207 / 245 aa (84.5%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[140-234]
- Domain count: 2
- Matched identifier: RROC_0789544
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 140-234 ; LytTR 140-234
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS01920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 469 · GCF_000173975
AssemblyASM17397v1 · Contighaploid
Genome composition3 290 996 bp · 38,0% GCAnaerobutyricum hallii DSM 3353
Signal transduction countsGenes 76 · HK 37 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key