1 Response_reg#1
4-115 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:4:1.7e-34:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS08885
Response regulator OmpR family
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000162015#FAEPRAA2165_RS08885Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-228 aa · 75 aa · 32.3% of protein
Raw token
Trans_reg_C:154:5.94e-34:228:75:77- Raw architecture: Response_reg:4:1.7e-34:115:113:111#Trans_reg_C:154:5.94e-34:228:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000162015::NZ_GG697152.2::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113248-114871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_02122RefSeq proteinWP_005933804.1
Context group ID
GCF_000162015::NZ_GG697152.2::G00012Context members
FAEPRAA2165_RS08885FAEPRAA2165_RS08890
Partner locus tags
FAEPRAA2165_RS08885FAEPRAA2165_RS08890
Partner old locus tags
FAEPRAA2165_02122FAEPRAA2165_02123
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005933804.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BT70Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BT70_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS08885Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_02122Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697152.2Sequence record reported by the local genomic context database.
Genomic interval113 248-113 946 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 248-114 871 ntGCF_000162015::NZ_GG697152.2::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697152.2::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697152.2All displayed genes belong to this local TCS context.
Neighborhood span113 248-114 871 nt1 624 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 248 nt114 871 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAA2165_RS08885GCF_000162015#FAEPRAA2165_RS08885
RROmpRCurrent focus
113 248-113 946 nt · Forward (+)
FAEPRAA2165_RS08890GCF_000162015#FAEPRAA2165_RS08890
HKClassic
113 948-114 871 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS08885The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119822
Simplified PFAM architecture for RROC_1119822
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1119822
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS08885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key