1 Response_reg#1
57-112 aa · 56 aa · 40.0% of protein
Raw token
Response_reg:57:0.00000000329:112:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS01755
Response regulator, CheY family
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeCheYLength140 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000162015#FAEPRAA2165_RS01755Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length140 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage56 / 140 aa (40.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa140 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:57:0.00000000329:112:59:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000162015::NZ_GG697149.2::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span381538-381960Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_00435RefSeq proteinWP_005929507.1
Context group ID
GCF_000162015::NZ_GG697149.2::G00035Context members
FAEPRAA2165_RS01755
Partner locus tags
FAEPRAA2165_RS01755
Partner old locus tags
FAEPRAA2165_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005929507.1Primary protein accession used for annex mappings.
UniProt accessionC7H2D8Primary UniProt accession resolved in the annex database.
UniProt IDC7H2D8_FAED2Display identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS01755Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_00435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697149.2Sequence record reported by the local genomic context database.
Genomic interval381 538-381 960 nt423 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span381 538-381 960 ntGCF_000162015::NZ_GG697149.2::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697149.2::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697149.2All displayed genes belong to this local TCS context.
Neighborhood span381 538-381 960 nt423 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
381 538 nt381 960 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAA2165_RS01755GCF_000162015#FAEPRAA2165_RS01755
RRCheYCurrent focus
381 538-381 960 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS01755The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2266071
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS01755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key