1 Response_reg#1
4-113 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:4:2.42e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS00355
Response regulator OmpR family
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000162015#FAEPRAA2165_RS00355Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 221 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.5% of protein
Raw token
Trans_reg_C:146:1.25e-27:219:77:77- Raw architecture: Response_reg:4:2.42e-34:113:111:111#Trans_reg_C:146:1.25e-27:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000162015::NZ_GG697149.2::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span74414-75079Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_00085RefSeq proteinWP_005928637.1
Context group ID
GCF_000162015::NZ_GG697149.2::G00029Context members
FAEPRAA2165_RS00355
Partner locus tags
FAEPRAA2165_RS00355
Partner old locus tags
FAEPRAA2165_00085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005928637.1Primary protein accession used for annex mappings.
UniProt accessionC7H1E7Primary UniProt accession resolved in the annex database.
UniProt IDC7H1E7_FAED2Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS00355Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_00085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697149.2Sequence record reported by the local genomic context database.
Genomic interval74 414-75 079 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 414-75 079 ntGCF_000162015::NZ_GG697149.2::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697149.2::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697149.2All displayed genes belong to this local TCS context.
Neighborhood span74 414-75 079 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 414 nt75 079 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAA2165_RS00355GCF_000162015#FAEPRAA2165_RS00355
RROmpRCurrent focus
74 414-75 079 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS00355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1677971
Simplified PFAM architecture for RROC_1677971
PFAM domain coverage: 181 / 221 aa (81.9%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-219]
- Domain count: 2
- Matched identifier: RROC_1677971
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-219 ; Trans_reg_C 149-219
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS00355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key