1 Response_reg#1
4-117 aa · 114 aa · 21.8% of protein
Raw token
Response_reg:4:4.88e-34:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS00600
Response regulator, unclassified
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeunclassifiedLength522 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000162015#FAEPRAA2165_RS00600Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length522 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 522 aa (37.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa522 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
426-466 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:426:0.0000000828:466:41:423 HTH_AraC#3
479-516 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:479:0.0000495:516:38:42- Raw architecture: Response_reg:4:4.88e-34:117:114:111#HTH_AraC:426:0.0000000828:466:41:42#HTH_AraC:479:0.0000495:516:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000162015::NZ_GG697149.2::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span124849-128239Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_00139RefSeq proteinWP_163397090.1
Context group ID
GCF_000162015::NZ_GG697149.2::G00033Context members
FAEPRAA2165_RS14860FAEPRAA2165_RS00600
Partner locus tags
FAEPRAA2165_RS14860FAEPRAA2165_RS00600
Partner old locus tags
FAEPRAA2165_00138FAEPRAA2165_00139
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_163397090.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS00600Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_00139Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697149.2Sequence record reported by the local genomic context database.
Genomic interval126 671-128 239 nt1 569 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span124 849-128 239 ntGCF_000162015::NZ_GG697149.2::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697149.2::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697149.2All displayed genes belong to this local TCS context.
Neighborhood span124 849-128 239 nt3 391 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 849 nt128 239 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAA2165_RS14860GCF_000162015#FAEPRAA2165_RS14860
HKClassic
124 849-126 696 nt · Forward (+)
FAEPRAA2165_RS00600GCF_000162015#FAEPRAA2165_RS00600
RRunclassifiedCurrent focus
126 671-128 239 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS00600The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0122957
Simplified PFAM architecture for RROC_0122957
PFAM domain coverage: 191 / 522 aa (36.6%)
1 aa522 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[439-516]
- Domain count: 2
- Matched identifier: RROC_0122957
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 439-516 ; HTH_18 439-516
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS00600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key