1 Response_reg#1
31-121 aa · 91 aa · 37.9% of protein
Raw token
Response_reg:31:0.00000237:121:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS00500
Response regulator LytTR family
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000162015#FAEPRAA2165_RS00500Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-234 aa · 96 aa · 40.0% of protein
Raw token
LytTR:139:0.0000000000000187:234:101:98- Raw architecture: Response_reg:31:0.00000237:121:95:111#LytTR:139:0.0000000000000187:234:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000162015::NZ_GG697149.2::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span101275-101997Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_00116RefSeq proteinWP_005928726.1
Context group ID
GCF_000162015::NZ_GG697149.2::G00031Context members
FAEPRAA2165_RS00500
Partner locus tags
FAEPRAA2165_RS00500
Partner old locus tags
FAEPRAA2165_00116
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005928726.1Primary protein accession used for annex mappings.
UniProt accessionC7H1H8Primary UniProt accession resolved in the annex database.
UniProt IDC7H1H8_FAED2Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS00500Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_00116Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697149.2Sequence record reported by the local genomic context database.
Genomic interval101 275-101 997 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 275-101 997 ntGCF_000162015::NZ_GG697149.2::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697149.2::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697149.2All displayed genes belong to this local TCS context.
Neighborhood span101 275-101 997 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 275 nt101 997 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAA2165_RS00500GCF_000162015#FAEPRAA2165_RS00500
RRLytTRCurrent focus
101 275-101 997 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS00500The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0882246
Simplified PFAM architecture for RROC_0882246
PFAM domain coverage: 93 / 240 aa (38.8%)
1 aa240 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[141-233]
- Domain count: 1
- Matched identifier: RROC_0882246
- Positioned domains: LytTR 141-233 ; LytTR 141-233
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS00500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key