1 Response_reg#1
5-110 aa · 106 aa · 48.2% of protein
Raw token
Response_reg:5:4.88e-35:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWB75_RS04910
Response regulator OmpR family
uncultured Catenibacterium sp. · GCF_937997555
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937997555#QWB75_RS04910Stable P2CS identifier used across views.
GenomeGCF_937997555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 220 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-213 aa · 72 aa · 32.7% of protein
Raw token
Trans_reg_C:142:1.5e-25:213:75:77- Raw architecture: Response_reg:5:4.88e-35:110:108:111#Trans_reg_C:142:1.5e-25:213:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937997555::NZ_CALLFE010000016.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17388-19845Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937997555::NZ_CALLFE010000016.1::G00006Context members
QWB75_RS04905QWB75_RS04910
Partner locus tags
QWB75_RS04905QWB75_RS04910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288950672.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWB75_RS04910Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALLFE010000016.1Sequence record reported by the local genomic context database.
Genomic interval19 183-19 845 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 388-19 845 ntGCF_937997555::NZ_CALLFE010000016.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937997555::NZ_CALLFE010000016.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALLFE010000016.1All displayed genes belong to this local TCS context.
Neighborhood span17 388-19 845 nt2 458 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 388 nt19 845 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QWB75_RS04905GCF_937997555#QWB75_RS04905
HKClassic
17 388-19 196 nt · Reverse (-)
QWB75_RS04910GCF_937997555#QWB75_RS04910
RROmpRCurrent focus
19 183-19 845 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_937997555#QWB75_RS04910The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1766325
Simplified PFAM architecture for RROC_1766325
PFAM domain coverage: 179 / 220 aa (81.4%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1766325
- Positioned domains: Response_reg 5-110 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_937997555#QWB75_RS04910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 286 142 · GCF_937997555
AssemblySRR11615778_bin.76_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 418 648 bp · 34,0% GCuncultured Catenibacterium sp.
Signal transduction countsGenes 34 · HK 15 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key