1 Response_reg#1
7-113 aa · 107 aa · 49.3% of protein
Raw token
Response_reg:7:1.46e-24:113:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWB75_RS01600
Response regulator OmpR family
uncultured Catenibacterium sp. · GCF_937997555
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937997555#QWB75_RS01600Stable P2CS identifier used across views.
GenomeGCF_937997555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 217 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 33.2% of protein
Raw token
Trans_reg_C:145:7.83e-27:216:77:77- Raw architecture: Response_reg:7:1.46e-24:113:108:111#Trans_reg_C:145:7.83e-27:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937997555::NZ_CALLFE010000006.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135027-136993Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937997555::NZ_CALLFE010000006.1::G00002Context members
QWB75_RS01600QWB75_RS01605
Partner locus tags
QWB75_RS01600QWB75_RS01605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022424455.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7KEH8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7KEH8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWB75_RS01600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALLFE010000006.1Sequence record reported by the local genomic context database.
Genomic interval135 027-135 680 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 027-136 993 ntGCF_937997555::NZ_CALLFE010000006.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937997555::NZ_CALLFE010000006.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALLFE010000006.1All displayed genes belong to this local TCS context.
Neighborhood span135 027-136 993 nt1 967 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 027 nt136 993 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QWB75_RS01600GCF_937997555#QWB75_RS01600
RROmpRCurrent focus
135 027-135 680 nt · Forward (+)
QWB75_RS01605GCF_937997555#QWB75_RS01605
HKClassic
135 680-136 993 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000437715#QVO42_RS01660Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1848876
Simplified PFAM architecture for RROC_1848876
PFAM domain coverage: 180 / 217 aa (82.9%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[146-216]
- Domain count: 2
- Matched identifier: RROC_1848876
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 146-216 ; Trans_reg_C 146-216
Cluster members and taxonomy
Representative gene: GCF_000437715#QVO42_RS01660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 286 142 · GCF_937997555
AssemblySRR11615778_bin.76_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 418 648 bp · 34,0% GCuncultured Catenibacterium sp.
Signal transduction countsGenes 34 · HK 15 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key