1 Response_reg#1
3-83 aa · 81 aa · 36.0% of protein
Raw token
Response_reg:3:0.0000000654:83:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWB75_RS01260
Response regulator LytTR family
uncultured Catenibacterium sp. · GCF_937997555
ClassRRTypeLytTRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_937997555#QWB75_RS01260Stable P2CS identifier used across views.
GenomeGCF_937997555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 225 aa (74.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 LytTR#2
129-215 aa · 87 aa · 38.7% of protein
Raw token
LytTR:129:0.0000000000000494:215:93:98- Raw architecture: Response_reg:3:0.0000000654:83:86:111#LytTR:129:0.0000000000000494:215:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_937997555::NZ_CALLFE010000006.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span77615-78292Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937997555::NZ_CALLFE010000006.1::G00001Context members
QWB75_RS01260
Partner locus tags
QWB75_RS01260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288949645.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWB75_RS01260Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALLFE010000006.1Sequence record reported by the local genomic context database.
Genomic interval77 615-78 292 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 615-78 292 ntGCF_937997555::NZ_CALLFE010000006.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937997555::NZ_CALLFE010000006.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALLFE010000006.1All displayed genes belong to this local TCS context.
Neighborhood span77 615-78 292 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 615 nt78 292 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QWB75_RS01260GCF_937997555#QWB75_RS01260
RRLytTRCurrent focus
77 615-78 292 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_937997555#QWB75_RS01260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1527049
Simplified PFAM architecture for RROC_1527049
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-99] | LytTR[130-216]
- Domain count: 2
- Matched identifier: RROC_1527049
- Positioned domains: Response_reg 3-99 ; LytTR 130-216
Cluster members and taxonomy
Representative gene: GCF_937997555#QWB75_RS01260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 286 142 · GCF_937997555
AssemblySRR11615778_bin.76_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 418 648 bp · 34,0% GCuncultured Catenibacterium sp.
Signal transduction countsGenes 34 · HK 15 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key