1 HAMP#1
309-378 aa · 70 aa · 11.6% of protein
Raw token
HAMP:309:0.000000000000181:378:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWB75_RS04905
Histidine kinase, Classic
uncultured Catenibacterium sp. · GCF_937997555
ClassHKTypeClassicLength602 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937997555#QWB75_RS04905Stable P2CS identifier used across views.
GenomeGCF_937997555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length602 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 602 aa (38.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa602 aa
Domain-by-domain annotation3 items
2 HisKA#2
397-461 aa · 65 aa · 10.8% of protein
Raw token
HisKA:397:2.85e-17:461:65:643 HATPase_c#3
506-601 aa · 96 aa · 15.9% of protein
Raw token
HATPase_c:506:5.3e-17:601:103:109- Raw architecture: HAMP:309:0.000000000000181:378:70:69#HisKA:397:2.85e-17:461:65:64#HATPase_c:506:5.3e-17:601:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937997555::NZ_CALLFE010000016.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17388-19845Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937997555::NZ_CALLFE010000016.1::G00006Context members
QWB75_RS04905QWB75_RS04910
Partner locus tags
QWB75_RS04905QWB75_RS04910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288950671.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWB75_RS04905Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALLFE010000016.1Sequence record reported by the local genomic context database.
Genomic interval17 388-19 196 nt1 809 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 388-19 845 ntGCF_937997555::NZ_CALLFE010000016.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937997555::NZ_CALLFE010000016.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALLFE010000016.1All displayed genes belong to this local TCS context.
Neighborhood span17 388-19 845 nt2 458 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 388 nt19 845 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QWB75_RS04905GCF_937997555#QWB75_RS04905
HKClassicCurrent focus
17 388-19 196 nt · Reverse (-)
QWB75_RS04910GCF_937997555#QWB75_RS04910
RROmpR
19 183-19 845 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_937997555#QWB75_RS04905The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1047222
Simplified PFAM architecture for HKOC_1047222
PFAM domain coverage: 211 / 602 aa (35.0%)
1 aa602 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[327-377] | HisKA[397-461] | HATPase_c[506-600]
- Domain count: 3
- Matched identifier: HKOC_1047222
- Positioned domains: HAMP 327-377 ; HisKA 397-461 ; HATPase_c 506-600
Cluster members and taxonomy
Representative gene: GCF_937997555#QWB75_RS04905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 286 142 · GCF_937997555
AssemblySRR11615778_bin.76_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 418 648 bp · 34,0% GCuncultured Catenibacterium sp.
Signal transduction countsGenes 34 · HK 15 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key