1 HAMP#1
160-225 aa · 66 aa · 15.1% of protein
Raw token
HAMP:160:0.000000000478:225:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWB75_RS01605
Histidine kinase, Classic
uncultured Catenibacterium sp. · GCF_937997555
ClassHKTypeClassicLength437 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937997555#QWB75_RS01605Stable P2CS identifier used across views.
GenomeGCF_937997555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length437 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 437 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa437 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-295 aa · 64 aa · 14.6% of protein
Raw token
HisKA:232:0.0000000033:295:64:643 HATPase_c#3
339-433 aa · 95 aa · 21.7% of protein
Raw token
HATPase_c:339:0.000000000000266:433:104:109- Raw architecture: HAMP:160:0.000000000478:225:67:69#HisKA:232:0.0000000033:295:64:64#HATPase_c:339:0.000000000000266:433:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937997555::NZ_CALLFE010000006.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135027-136993Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937997555::NZ_CALLFE010000006.1::G00002Context members
QWB75_RS01600QWB75_RS01605
Partner locus tags
QWB75_RS01600QWB75_RS01605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288949720.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWB75_RS01605Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALLFE010000006.1Sequence record reported by the local genomic context database.
Genomic interval135 680-136 993 nt1 314 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 027-136 993 ntGCF_937997555::NZ_CALLFE010000006.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937997555::NZ_CALLFE010000006.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALLFE010000006.1All displayed genes belong to this local TCS context.
Neighborhood span135 027-136 993 nt1 967 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 027 nt136 993 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QWB75_RS01600GCF_937997555#QWB75_RS01600
RROmpR
135 027-135 680 nt · Forward (+)
QWB75_RS01605GCF_937997555#QWB75_RS01605
HKClassicCurrent focus
135 680-136 993 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_937997555#QWB75_RS01605The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2112803
Simplified PFAM architecture for HKOC_2112803
PFAM domain coverage: 158 / 437 aa (36.2%)
1 aa437 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-295] | HATPase_c[340-433]
- Domain count: 2
- Matched identifier: HKOC_2112803
- Positioned domains: HisKA 232-295 ; HATPase_c 340-433
Cluster members and taxonomy
Representative gene: GCF_937997555#QWB75_RS01605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 286 142 · GCF_937997555
AssemblySRR11615778_bin.76_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 418 648 bp · 34,0% GCuncultured Catenibacterium sp.
Signal transduction countsGenes 34 · HK 15 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key