1 Response_reg#1
3-113 aa · 111 aa · 50.0% of protein
Raw token
Response_reg:3:8.55e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FN517_RS10290
Response regulator OmpR family
Escherichia coli · GCF_902164025
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902164025#FN517_RS10290Stable P2CS identifier used across views.
GenomeGCF_902164025Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 222 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.4% of protein
Raw token
Trans_reg_C:145:2.71e-25:216:77:77- Raw architecture: Response_reg:3:8.55e-37:113:111:111#Trans_reg_C:145:2.71e-25:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902164025::NZ_CABHBW010000005.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144717-146486Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902164025::NZ_CABHBW010000005.1::G00021Context members
FN517_RS10285FN517_RS10290
Partner locus tags
FN517_RS10285FN517_RS10290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000697905.1Primary protein accession used for annex mappings.
UniProt accessionF4T7G6Primary UniProt accession resolved in the annex database.
UniProt IDF4T7G6_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFN517_RS10290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABHBW010000005.1Sequence record reported by the local genomic context database.
Genomic interval145 818-146 486 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span144 717-146 486 ntGCF_902164025::NZ_CABHBW010000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902164025::NZ_CABHBW010000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHBW010000005.1All displayed genes belong to this local TCS context.
Neighborhood span144 717-146 486 nt1 770 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 717 nt146 486 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FN517_RS10285GCF_902164025#FN517_RS10285
HKClassic
144 717-145 817 nt · Reverse (-)
FN517_RS10290GCF_902164025#FN517_RS10290
RROmpRCurrent focus
145 818-146 486 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010485#ECSF_RS21255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637326
Simplified PFAM architecture for RROC_1637326
PFAM domain coverage: 183 / 222 aa (82.4%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1637326
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000010485#ECSF_RS21255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_902164025
Assembly25964_2#194 · Scaffoldhaploid
Genome composition5 252 367 bp · 50,0% GCEscherichia coli
Signal transduction countsGenes 66 · HK 32 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key