1 PAS#1
11-99 aa · 89 aa · 25.5% of protein
Raw token
PAS:11:0.000000682:99:92:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FN517_RS05610
Histidine kinase, Classic
Escherichia coli · GCF_902164025
ClassHKTypeClassicLength349 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902164025#FN517_RS05610Stable P2CS identifier used across views.
GenomeGCF_902164025Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 349 aa (74.8%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-186 aa · 56 aa · 16.0% of protein
Raw token
HisKA:131:0.00000000000067:186:56:643 HATPase_c#3
234-349 aa · 116 aa · 33.2% of protein
Raw token
HATPase_c:234:4.49e-24:349:120:109- Raw architecture: PAS:11:0.000000682:99:92:113#HisKA:131:0.00000000000067:186:56:64#HATPase_c:234:4.49e-24:349:120:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902164025::NZ_CABHBW010000003.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13176-15646Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902164025::NZ_CABHBW010000003.1::G00015Context members
FN517_RS05605FN517_RS05610
Partner locus tags
FN517_RS05605FN517_RS05610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000190574.1Primary protein accession used for annex mappings.
UniProt accessionB7N2L1Primary UniProt accession resolved in the annex database.
UniProt IDB7N2L1_ECO81Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFN517_RS05610Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABHBW010000003.1Sequence record reported by the local genomic context database.
Genomic interval14 597-15 646 nt1 050 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 176-15 646 ntGCF_902164025::NZ_CABHBW010000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902164025::NZ_CABHBW010000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHBW010000003.1All displayed genes belong to this local TCS context.
Neighborhood span13 176-15 646 nt2 471 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 176 nt15 646 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FN517_RS05605GCF_902164025#FN517_RS05605
RRNtrC
13 176-14 585 nt · Reverse (-)
FN517_RS05610GCF_902164025#FN517_RS05610
HKClassicCurrent focus
14 597-15 646 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007445#C_RS22760Use this link to inspect the representative gene detail.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2800896
Simplified PFAM architecture for HKOC_2800896
PFAM domain coverage: 260 / 349 aa (74.5%)
1 aa349 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[11-99] | HisKA[131-186] | HATPase_c[234-348]
- Domain count: 3
- Matched identifier: HKOC_2800896
- Positioned domains: PAS 11-99 ; HisKA 131-186 ; HATPase_c 234-348
Cluster members and taxonomy
Representative gene: GCF_000007445#C_RS22760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_902164025
Assembly25964_2#194 · Scaffoldhaploid
Genome composition5 252 367 bp · 50,0% GCEscherichia coli
Signal transduction countsGenes 66 · HK 32 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key