1 HAMP#1
71-139 aa · 69 aa · 19.0% of protein
Raw token
HAMP:71:0.00000422:139:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C9996_RS03750
Histidine kinase, Classic
Massilistercora timonensis · GCF_900312975
ClassHKTypeClassicLength363 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900312975#C9996_RS03750Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length363 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 363 aa (63.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa363 aa
Domain-by-domain annotation3 items
2 HisKA#2
152-213 aa · 62 aa · 17.1% of protein
Raw token
HisKA:152:0.000000000231:213:63:643 HATPase_c#3
258-357 aa · 100 aa · 27.5% of protein
Raw token
HATPase_c:258:4.77e-16:357:102:109- Raw architecture: HAMP:71:0.00000422:139:69:69#HisKA:152:0.000000000231:213:63:64#HATPase_c:258:4.77e-16:357:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900312975::NZ_LT990039.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span758256-760024Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900312975::NZ_LT990039.1::G00005Context members
C9996_RS03750C9996_RS03755
Partner locus tags
C9996_RS03750C9996_RS03755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_106790503.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC9996_RS03750Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LT990039.1Sequence record reported by the local genomic context database.
Genomic interval758 256-759 347 nt1 092 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span758 256-760 024 ntGCF_900312975::NZ_LT990039.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900312975::NZ_LT990039.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LT990039.1All displayed genes belong to this local TCS context.
Neighborhood span758 256-760 024 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
758 256 nt760 024 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C9996_RS03750GCF_900312975#C9996_RS03750
HKClassicCurrent focus
758 256-759 347 nt · Reverse (-)
C9996_RS03755GCF_900312975#C9996_RS03755
RROmpR
759 353-760 024 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042848755#ACGHEI_RS10315Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2697049
Simplified PFAM architecture for HKOC_2697049
PFAM domain coverage: 204 / 369 aa (55.3%)
1 aa369 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[100-146] | HisKA[159-218] | HATPase_c[268-364]
- Domain count: 3
- Matched identifier: HKOC_2697049
- Positioned domains: HAMP 100-146 ; HisKA 159-218 ; HATPase_c 268-364
Cluster members and taxonomy
Representative gene: GCF_042848755#ACGHEI_RS10315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 086 584 · GCF_900312975
AssemblyPRJEB24953 · Complete Genomereference genome · haploid
Genome composition2 769 591 bp · 51,0% GCMassilistercora timonensis
Signal transduction countsGenes 47 · HK 23 · RR 24CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyNoneGenusMassilistercora
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6None7Massilistercora
Related genes
Preview from the same derived genome key