1 HAMP#1
77-145 aa · 69 aa · 18.7% of protein
Raw token
HAMP:77:0.00000447:145:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHEI_RS10315
Histidine kinase, Classic
Pseudoflavonifractor gallinarum · GCF_042848755
ClassHKTypeClassicLength369 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042848755#ACGHEI_RS10315Stable P2CS identifier used across views.
GenomeGCF_042848755Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Pseudoflavonifractor
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length369 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 369 aa (62.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa369 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-219 aa · 62 aa · 16.8% of protein
Raw token
HisKA:158:0.000000000272:219:63:643 HATPase_c#3
264-363 aa · 100 aa · 27.1% of protein
Raw token
HATPase_c:264:4.53e-16:363:102:109- Raw architecture: HAMP:77:0.00000447:145:69:69#HisKA:158:0.000000000272:219:63:64#HATPase_c:264:4.53e-16:363:102:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042848755::NZ_AP031438.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2113097-2114880Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI4200191B4_20300RefSeq proteinWP_390450886.1
Context group ID
GCF_042848755::NZ_AP031438.1::G00023Context members
ACGHEI_RS10310ACGHEI_RS10315
Partner locus tags
ACGHEI_RS10310ACGHEI_RS10315
Partner old locus tags
I4200191B4_20290I4200191B4_20300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390450886.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHEI_RS10315Primary locus identifier stored in the genes table.
Old locus tagI4200191B4_20300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031438.1Sequence record reported by the local genomic context database.
Genomic interval2 113 771-2 114 880 nt1 110 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 113 097-2 114 880 ntGCF_042848755::NZ_AP031438.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042848755::NZ_AP031438.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031438.1All displayed genes belong to this local TCS context.
Neighborhood span2 113 097-2 114 880 nt1 784 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 113 097 nt2 114 880 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHEI_RS10310GCF_042848755#ACGHEI_RS10310
RROmpR
2 113 097-2 113 783 nt · Forward (+)
ACGHEI_RS10315GCF_042848755#ACGHEI_RS10315
HKClassicCurrent focus
2 113 771-2 114 880 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042848755#ACGHEI_RS10315The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2697049
Simplified PFAM architecture for HKOC_2697049
PFAM domain coverage: 204 / 369 aa (55.3%)
1 aa369 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[100-146] | HisKA[159-218] | HATPase_c[268-364]
- Domain count: 3
- Matched identifier: HKOC_2697049
- Positioned domains: HAMP 100-146 ; HisKA 159-218 ; HATPase_c 268-364
Cluster members and taxonomy
Representative gene: GCF_042848755#ACGHEI_RS10315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 779 352 · GCF_042848755
AssemblyASM4284875v1 · Complete Genomehaploid
Genome composition3 280 003 bp · 59,5% GCPseudoflavonifractor gallinarum
Signal transduction countsGenes 59 · HK 29 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusPseudoflavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Pseudoflavonifractor
Related genes
Preview from the same derived genome key