1 Response_reg#1
6-121 aa · 116 aa · 44.1% of protein
Raw token
Response_reg:6:1.14e-21:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C9996_RS01625
Response regulator Spo0A family
Massilistercora timonensis · GCF_900312975
ClassRRTypeSpo0ALength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900312975#C9996_RS01625Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 263 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
153-256 aa · 104 aa · 39.5% of protein
Raw token
Spo0A_C:153:2.5e-65:256:104:104- Raw architecture: Response_reg:6:1.14e-21:121:116:111#Spo0A_C:153:2.5e-65:256:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900312975::NZ_LT990039.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span319150-319941Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900312975::NZ_LT990039.1::G00001Context members
C9996_RS01625
Partner locus tags
C9996_RS01625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_106788447.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC9996_RS01625Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LT990039.1Sequence record reported by the local genomic context database.
Genomic interval319 150-319 941 nt792 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span319 150-319 941 ntGCF_900312975::NZ_LT990039.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900312975::NZ_LT990039.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LT990039.1All displayed genes belong to this local TCS context.
Neighborhood span319 150-319 941 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
319 150 nt319 941 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C9996_RS01625GCF_900312975#C9996_RS01625
RRSpo0ACurrent focus
319 150-319 941 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900312975#C9996_RS01625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0643862
Simplified PFAM architecture for RROC_0643862
PFAM domain coverage: 219 / 263 aa (83.3%)
1 aa263 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[153-256]
- Domain count: 2
- Matched identifier: RROC_0643862
- Positioned domains: Response_reg 6-120 ; Spo0A_C 153-256
Cluster members and taxonomy
Representative gene: GCF_900312975#C9996_RS01625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 086 584 · GCF_900312975
AssemblyPRJEB24953 · Complete Genomereference genome · haploid
Genome composition2 769 591 bp · 51,0% GCMassilistercora timonensis
Signal transduction countsGenes 47 · HK 23 · RR 24CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyNoneGenusMassilistercora
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6None7Massilistercora
Related genes
Preview from the same derived genome key