1 HisKA#1
85-151 aa · 67 aa · 21.7% of protein
Raw token
HisKA:85:0.00000000649:151:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C9996_RS02575
Histidine kinase, Classic
Massilistercora timonensis · GCF_900312975
ClassHKTypeClassicLength309 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900312975#C9996_RS02575Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length309 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 309 aa (57.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa309 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-306 aa · 110 aa · 35.6% of protein
Raw token
HATPase_c:197:4.16e-28:306:110:109- Raw architecture: HisKA:85:0.00000000649:151:67:64#HATPase_c:197:4.16e-28:306:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900312975::NZ_LT990039.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span520978-522608Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900312975::NZ_LT990039.1::G00003Context members
C9996_RS02575C9996_RS02580
Partner locus tags
C9996_RS02575C9996_RS02580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_106788641.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC9996_RS02575Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LT990039.1Sequence record reported by the local genomic context database.
Genomic interval520 978-521 907 nt930 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span520 978-522 608 ntGCF_900312975::NZ_LT990039.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900312975::NZ_LT990039.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LT990039.1All displayed genes belong to this local TCS context.
Neighborhood span520 978-522 608 nt1 631 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
520 978 nt522 608 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C9996_RS02575GCF_900312975#C9996_RS02575
HKClassicCurrent focus
520 978-521 907 nt · Reverse (-)
C9996_RS02580GCF_900312975#C9996_RS02580
RROmpR
521 937-522 608 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900312975#C9996_RS02575The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879857
Simplified PFAM architecture for HKOC_2879857
PFAM domain coverage: 172 / 309 aa (55.7%)
1 aa309 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-149] | HATPase_c[197-305]
- Domain count: 2
- Matched identifier: HKOC_2879857
- Positioned domains: HisKA 87-149 ; HATPase_c 197-305
Cluster members and taxonomy
Representative gene: GCF_900312975#C9996_RS02575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 086 584 · GCF_900312975
AssemblyPRJEB24953 · Complete Genomereference genome · haploid
Genome composition2 769 591 bp · 51,0% GCMassilistercora timonensis
Signal transduction countsGenes 47 · HK 23 · RR 24CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyNoneGenusMassilistercora
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6None7Massilistercora
Related genes
Preview from the same derived genome key