1 Response_reg#1
5-112 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:5:7.69e-36:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C9996_RS03755
Response regulator OmpR family
Massilistercora timonensis · GCF_900312975
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900312975#C9996_RS03755Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:147:8.18e-25:221:76:77- Raw architecture: Response_reg:5:7.69e-36:112:111:111#Trans_reg_C:147:8.18e-25:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900312975::NZ_LT990039.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span758256-760024Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900312975::NZ_LT990039.1::G00005Context members
C9996_RS03750C9996_RS03755
Partner locus tags
C9996_RS03750C9996_RS03755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_187302044.1Primary protein accession used for annex mappings.
UniProt accessionA0A923NH46Primary UniProt accession resolved in the annex database.
UniProt IDA0A923NH46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC9996_RS03755Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LT990039.1Sequence record reported by the local genomic context database.
Genomic interval759 353-760 024 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span758 256-760 024 ntGCF_900312975::NZ_LT990039.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900312975::NZ_LT990039.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LT990039.1All displayed genes belong to this local TCS context.
Neighborhood span758 256-760 024 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
758 256 nt760 024 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C9996_RS03750GCF_900312975#C9996_RS03750
HKClassic
758 256-759 347 nt · Reverse (-)
C9996_RS03755GCF_900312975#C9996_RS03755
RROmpRCurrent focus
759 353-760 024 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014333425#H9L42_RS03625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1607362
Simplified PFAM architecture for RROC_1607362
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1607362
- Positioned domains: Response_reg 5-111 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_014333425#H9L42_RS03625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 086 584 · GCF_900312975
AssemblyPRJEB24953 · Complete Genomereference genome · haploid
Genome composition2 769 591 bp · 51,0% GCMassilistercora timonensis
Signal transduction countsGenes 47 · HK 23 · RR 24CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyNoneGenusMassilistercora
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6None7Massilistercora
Related genes
Preview from the same derived genome key