1 HisKA#1
115-180 aa · 66 aa · 19.7% of protein
Raw token
HisKA:115:0.00000687:180:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C9996_RS02370
Histidine kinase, Classic
Massilistercora timonensis · GCF_900312975
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900312975#C9996_RS02370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 335 aa (51.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
225-331 aa · 107 aa · 31.9% of protein
Raw token
HATPase_c:225:5.33e-25:331:111:109- Raw architecture: HisKA:115:0.00000687:180:66:64#HATPase_c:225:5.33e-25:331:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900312975::NZ_LT990039.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span472201-473888Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900312975::NZ_LT990039.1::G00002Context members
C9996_RS02370C9996_RS02375
Partner locus tags
C9996_RS02370C9996_RS02375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_197710805.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC9996_RS02370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LT990039.1Sequence record reported by the local genomic context database.
Genomic interval472 201-473 208 nt1 008 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span472 201-473 888 ntGCF_900312975::NZ_LT990039.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900312975::NZ_LT990039.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LT990039.1All displayed genes belong to this local TCS context.
Neighborhood span472 201-473 888 nt1 688 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
472 201 nt473 888 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C9996_RS02370GCF_900312975#C9996_RS02370
HKClassicCurrent focus
472 201-473 208 nt · Reverse (-)
C9996_RS02375GCF_900312975#C9996_RS02375
RROmpR
473 205-473 888 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900312975#C9996_RS02370The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849666
Simplified PFAM architecture for HKOC_2849666
PFAM domain coverage: 104 / 335 aa (31.0%)
1 aa335 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[226-329]
- Domain count: 1
- Matched identifier: HKOC_2849666
- Positioned domains: HATPase_c 226-329
Cluster members and taxonomy
Representative gene: GCF_900312975#C9996_RS02370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 086 584 · GCF_900312975
AssemblyPRJEB24953 · Complete Genomereference genome · haploid
Genome composition2 769 591 bp · 51,0% GCMassilistercora timonensis
Signal transduction countsGenes 47 · HK 23 · RR 24CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyNoneGenusMassilistercora
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6None7Massilistercora
Related genes
Preview from the same derived genome key