1 Response_reg#1
5-106 aa · 102 aa · 46.6% of protein
Raw token
Response_reg:5:0.00000000000576:106:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHU6_RS02060
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_042853905
ClassRRTypeLytTRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042853905#ACGHU6_RS02060Stable P2CS identifier used across views.
GenomeGCF_042853905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 219 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 LytTR#2
123-210 aa · 88 aa · 40.2% of protein
Raw token
LytTR:123:0.0000000000042:210:93:98- Raw architecture: Response_reg:5:0.00000000000576:106:113:111#LytTR:123:0.0000000000042:210:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042853905::NZ_AP031432.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span383354-384013Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI3200192J8_03850RefSeq proteinWP_390590112.1
Context group ID
GCF_042853905::NZ_AP031432.1::G00005Context members
ACGHU6_RS02060
Partner locus tags
ACGHU6_RS02060
Partner old locus tags
I3200192J8_03850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390590112.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHU6_RS02060Primary locus identifier stored in the genes table.
Old locus tagI3200192J8_03850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031432.1Sequence record reported by the local genomic context database.
Genomic interval383 354-384 013 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span383 354-384 013 ntGCF_042853905::NZ_AP031432.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042853905::NZ_AP031432.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031432.1All displayed genes belong to this local TCS context.
Neighborhood span383 354-384 013 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
383 354 nt384 013 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHU6_RS02060GCF_042853905#ACGHU6_RS02060
RRLytTRCurrent focus
383 354-384 013 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042853905#ACGHU6_RS02060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1805431
Simplified PFAM architecture for RROC_1805431
PFAM domain coverage: 183 / 219 aa (83.6%)
1 aa219 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-102] | LytTR[126-210]
- Domain count: 2
- Matched identifier: RROC_1805431
- Positioned domains: Response_reg 5-102 ; LytTR 126-210
Cluster members and taxonomy
Representative gene: GCF_042853905#ACGHU6_RS02060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_042853905
AssemblyASM4285390v1 · Complete Genomehaploid
Genome composition2 890 523 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 53 · HK 20 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key