1 HisKA#1
179-243 aa · 65 aa · 11.6% of protein
Raw token
HisKA:179:0.00000000000000114:243:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHU6_RS03970
Histidine kinase, Hybrid
Faecalibacillus intestinalis · GCF_042853905
ClassHKTypeHybridLength560 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042853905#ACGHU6_RS03970Stable P2CS identifier used across views.
GenomeGCF_042853905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length560 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 560 aa (53.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa560 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
290-406 aa · 117 aa · 20.9% of protein
Raw token
HATPase_c:290:5.28e-30:406:117:1093 Response_reg#3
430-546 aa · 117 aa · 20.9% of protein
Raw token
Response_reg:430:6.19e-22:546:117:111- Raw architecture: HisKA:179:0.00000000000000114:243:65:64#HATPase_c:290:5.28e-30:406:117:109#Response_reg:430:6.19e-22:546:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042853905::NZ_AP031432.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span761138-762820Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI3200192J8_07570RefSeq proteinWP_158569951.1
Context group ID
GCF_042853905::NZ_AP031432.1::G00008Context members
ACGHU6_RS03970
Partner locus tags
ACGHU6_RS03970
Partner old locus tags
I3200192J8_07570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158569951.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I8E0H3Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I8E0H3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHU6_RS03970Primary locus identifier stored in the genes table.
Old locus tagI3200192J8_07570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031432.1Sequence record reported by the local genomic context database.
Genomic interval761 138-762 820 nt1 683 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span761 138-762 820 ntGCF_042853905::NZ_AP031432.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042853905::NZ_AP031432.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031432.1All displayed genes belong to this local TCS context.
Neighborhood span761 138-762 820 nt1 683 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
761 138 nt762 820 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHU6_RS03970GCF_042853905#ACGHU6_RS03970
HKHybridCurrent focus
761 138-762 820 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS04015Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1259350
Simplified PFAM architecture for HKOC_1259350
PFAM domain coverage: 297 / 560 aa (53.0%)
1 aa560 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[179-243] | HATPase_c[290-405] | Response_reg[430-545]
- Domain count: 3
- Matched identifier: HKOC_1259350
- Positioned domains: HisKA 179-243 ; HATPase_c 290-405 ; Response_reg 430-545
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS04015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_042853905
AssemblyASM4285390v1 · Complete Genomehaploid
Genome composition2 890 523 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 53 · HK 20 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key