1 Response_reg#1
3-110 aa · 108 aa · 48.6% of protein
Raw token
Response_reg:3:1.08e-33:110:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHU6_RS00740
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_042853905
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042853905#ACGHU6_RS00740Stable P2CS identifier used across views.
GenomeGCF_042853905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 222 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
141-214 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:141:2.74e-22:214:77:77- Raw architecture: Response_reg:3:1.08e-33:110:109:111#Trans_reg_C:141:2.74e-22:214:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042853905::NZ_AP031432.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138505-140734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI3200192J8_01450RefSeq proteinWP_118473625.1
Context group ID
GCF_042853905::NZ_AP031432.1::G00001Context members
ACGHU6_RS00740ACGHU6_RS00745
Partner locus tags
ACGHU6_RS00740ACGHU6_RS00745
Partner old locus tags
I3200192J8_01450I3200192J8_01460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118473625.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHU6_RS00740Primary locus identifier stored in the genes table.
Old locus tagI3200192J8_01450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031432.1Sequence record reported by the local genomic context database.
Genomic interval138 505-139 173 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 505-140 734 ntGCF_042853905::NZ_AP031432.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042853905::NZ_AP031432.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031432.1All displayed genes belong to this local TCS context.
Neighborhood span138 505-140 734 nt2 230 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 505 nt140 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHU6_RS00740GCF_042853905#ACGHU6_RS00740
RROmpRCurrent focus
138 505-139 173 nt · Forward (+)
ACGHU6_RS00745GCF_042853905#ACGHU6_RS00745
HKClassic
139 166-140 734 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667505#I4U61_RS09660Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1653852
Simplified PFAM architecture for RROC_1653852
PFAM domain coverage: 181 / 222 aa (81.5%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1653852
- Positioned domains: Response_reg 3-110 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_015667505#I4U61_RS09660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_042853905
AssemblyASM4285390v1 · Complete Genomehaploid
Genome composition2 890 523 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 53 · HK 20 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key