1 Response_reg#1
7-119 aa · 113 aa · 22.7% of protein
Raw token
Response_reg:7:9.48e-25:119:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHU6_RS03995
Response regulator RpfG family
Faecalibacillus intestinalis · GCF_042853905
ClassRRTypeRpfGLength497 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042853905#ACGHU6_RS03995Stable P2CS identifier used across views.
GenomeGCF_042853905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 497 aa (43.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation2 items
2 HD#2
195-299 aa · 105 aa · 21.1% of protein
Raw token
HD:195:0.00000000000537:299:105:110- Raw architecture: Response_reg:7:9.48e-25:119:115:111#HD:195:0.00000000000537:299:105:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042853905::NZ_AP031432.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span770564-772057Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI3200192J8_07620RefSeq proteinWP_158562292.1
Context group ID
GCF_042853905::NZ_AP031432.1::G00009Context members
ACGHU6_RS03995
Partner locus tags
ACGHU6_RS03995
Partner old locus tags
I3200192J8_07620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158562292.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I8DWP7Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I8DWP7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHU6_RS03995Primary locus identifier stored in the genes table.
Old locus tagI3200192J8_07620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031432.1Sequence record reported by the local genomic context database.
Genomic interval770 564-772 057 nt1 494 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span770 564-772 057 ntGCF_042853905::NZ_AP031432.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042853905::NZ_AP031432.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031432.1All displayed genes belong to this local TCS context.
Neighborhood span770 564-772 057 nt1 494 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
770 564 nt772 057 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHU6_RS03995GCF_042853905#ACGHU6_RS03995
RRRpfGCurrent focus
770 564-772 057 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS04040Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0161581
Simplified PFAM architecture for RROC_0161581
PFAM domain coverage: 264 / 497 aa (53.1%)
1 aa497 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-118] | HD_5[170-321]
- Domain count: 2
- Matched identifier: RROC_0161581
- Positioned domains: Response_reg 7-118 ; HD_5 170-321
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS04040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_042853905
AssemblyASM4285390v1 · Complete Genomehaploid
Genome composition2 890 523 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 53 · HK 20 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key