1 Response_reg#1
5-91 aa · 87 aa · 36.7% of protein
Raw token
Response_reg:5:0.0000000023:91:89:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHU6_RS01435
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_042853905
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042853905#ACGHU6_RS01435Stable P2CS identifier used across views.
GenomeGCF_042853905Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 237 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-229 aa · 88 aa · 37.1% of protein
Raw token
LytTR:142:0.0000000000000022:229:90:98- Raw architecture: Response_reg:5:0.0000000023:91:89:111#LytTR:142:0.0000000000000022:229:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042853905::NZ_AP031432.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span279466-280179Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI3200192J8_02780RefSeq proteinWP_022000873.1
Context group ID
GCF_042853905::NZ_AP031432.1::G00003Context members
ACGHU6_RS01435
Partner locus tags
ACGHU6_RS01435
Partner old locus tags
I3200192J8_02780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022000873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHU6_RS01435Primary locus identifier stored in the genes table.
Old locus tagI3200192J8_02780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031432.1Sequence record reported by the local genomic context database.
Genomic interval279 466-280 179 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span279 466-280 179 ntGCF_042853905::NZ_AP031432.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042853905::NZ_AP031432.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031432.1All displayed genes belong to this local TCS context.
Neighborhood span279 466-280 179 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
279 466 nt280 179 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHU6_RS01435GCF_042853905#ACGHU6_RS01435
RRLytTRCurrent focus
279 466-280 179 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667505#I4U61_RS13965Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0973290
Simplified PFAM architecture for RROC_0973290
PFAM domain coverage: 92 / 237 aa (38.8%)
1 aa237 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[138-229]
- Domain count: 1
- Matched identifier: RROC_0973290
- Positioned domains: LytTR 138-229
Cluster members and taxonomy
Representative gene: GCF_015667505#I4U61_RS13965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_042853905
AssemblyASM4285390v1 · Complete Genomehaploid
Genome composition2 890 523 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 53 · HK 20 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key