1 HAMP#1
161-231 aa · 71 aa · 15.2% of protein
Raw token
HAMP:161:0.0000000431:231:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS16050
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_036211925
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS16050Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 468 aa (54.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-296 aa · 61 aa · 13.0% of protein
Raw token
HisKA:236:5.96e-20:296:61:643 HATPase_c#3
345-468 aa · 124 aa · 26.5% of protein
Raw token
HATPase_c:345:3.61e-27:468:124:109- Raw architecture: HAMP:161:0.0000000431:231:71:69#HisKA:236:5.96e-20:296:61:64#HATPase_c:345:3.61e-27:468:124:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000022.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145567-147700Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_16050RefSeq proteinWP_012957882.1
Context group ID
GCF_036211925::NZ_JARMCN010000022.1::G00037Context members
P4U41_RS16050P4U41_RS16055
Partner locus tags
P4U41_RS16050P4U41_RS16055
Partner old locus tags
P4U41_16050P4U41_16055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_012957882.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS16050Primary locus identifier stored in the genes table.
Old locus tagP4U41_16050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000022.1Sequence record reported by the local genomic context database.
Genomic interval145 567-146 973 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span145 567-147 700 ntGCF_036211925::NZ_JARMCN010000022.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000022.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000022.1All displayed genes belong to this local TCS context.
Neighborhood span145 567-147 700 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 567 nt147 700 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS16050GCF_036211925#P4U41_RS16050
HKClassicCurrent focus
145 567-146 973 nt · Reverse (-)
P4U41_RS16055GCF_036211925#P4U41_RS16055
RROmpR
146 960-147 700 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS16050The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1744378
Simplified PFAM architecture for HKOC_1744378
PFAM domain coverage: 184 / 468 aa (39.3%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-296] | HATPase_c[345-467]
- Domain count: 2
- Matched identifier: HKOC_1744378
- Positioned domains: HisKA 236-296 ; HATPase_c 345-467
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS16050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key