1 CheW#1
17-152 aa · 136 aa · 45.5% of protein
Raw token
CheW:17:3.78e-38:152:137:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS00245
Response regulator CheV family
Alkalihalophilus marmarensis · GCF_036211925
ClassRRTypeCheVLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211925#P4U41_RS00245Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 299 aa (85.6%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-295 aa · 120 aa · 40.1% of protein
Raw token
Response_reg:176:7.74e-23:295:121:111- Raw architecture: CheW:17:3.78e-38:152:137:138#Response_reg:176:7.74e-23:295:121:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211925::NZ_JARMCN010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span43363-44262Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_00245RefSeq proteinWP_012959219.1
Context group ID
GCF_036211925::NZ_JARMCN010000001.1::G00001Context members
P4U41_RS00245
Partner locus tags
P4U41_RS00245
Partner old locus tags
P4U41_00245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959219.1Primary protein accession used for annex mappings.
UniProt accessionD3FSZ2Primary UniProt accession resolved in the annex database.
UniProt IDD3FSZ2_ALKPODisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS00245Primary locus identifier stored in the genes table.
Old locus tagP4U41_00245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000001.1Sequence record reported by the local genomic context database.
Genomic interval43 363-44 262 nt900 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 363-44 262 ntGCF_036211925::NZ_JARMCN010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span43 363-44 262 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 363 nt44 262 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U41_RS00245GCF_036211925#P4U41_RS00245
RRCheVCurrent focus
43 363-44 262 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS10895Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0574461
Simplified PFAM architecture for RROC_0574461
PFAM domain coverage: 253 / 299 aa (84.6%)
1 aa299 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[17-150] | Response_reg[176-294]
- Domain count: 2
- Matched identifier: RROC_0574461
- Positioned domains: CheW 17-150 ; CheW 17-150 ; Response_reg 176-294 ; Response_reg 176-294
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS10895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key