1 Response_reg#1
4-113 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:4:1.23e-23:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS00725
Response regulator OmpR family
Alkalihalophilus marmarensis · GCF_036211925
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211925#P4U41_RS00725Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 226 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-222 aa · 72 aa · 31.9% of protein
Raw token
Trans_reg_C:151:4.03e-25:222:73:77- Raw architecture: Response_reg:4:1.23e-23:113:111:111#Trans_reg_C:151:4.03e-25:222:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211925::NZ_JARMCN010000002.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34058-34738Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_00725RefSeq proteinWP_327868824.1
Context group ID
GCF_036211925::NZ_JARMCN010000002.1::G00002Context members
P4U41_RS00725
Partner locus tags
P4U41_RS00725
Partner old locus tags
P4U41_00725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327868824.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS00725Primary locus identifier stored in the genes table.
Old locus tagP4U41_00725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000002.1Sequence record reported by the local genomic context database.
Genomic interval34 058-34 738 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 058-34 738 ntGCF_036211925::NZ_JARMCN010000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span34 058-34 738 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 058 nt34 738 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U41_RS00725GCF_036211925#P4U41_RS00725
RROmpRCurrent focus
34 058-34 738 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS00725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1444667
Simplified PFAM architecture for RROC_1444667
PFAM domain coverage: 182 / 226 aa (80.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-222]
- Domain count: 2
- Matched identifier: RROC_1444667
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 151-222
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS00725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key