1 HisKA_3#1
179-242 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:179:7.75e-26:242:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS00770
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_036211925
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS00770Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 376 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
287-366 aa · 80 aa · 21.3% of protein
Raw token
HATPase_c:287:0.00000000000393:366:97:109- Raw architecture: HisKA_3:179:7.75e-26:242:64:68#HATPase_c:287:0.00000000000393:366:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44172-45903Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_00770RefSeq proteinWP_327868831.1
Context group ID
GCF_036211925::NZ_JARMCN010000002.1::G00003Context members
P4U41_RS00770P4U41_RS00775
Partner locus tags
P4U41_RS00770P4U41_RS00775
Partner old locus tags
P4U41_00770P4U41_00775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327868831.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS00770Primary locus identifier stored in the genes table.
Old locus tagP4U41_00770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000002.1Sequence record reported by the local genomic context database.
Genomic interval44 172-45 302 nt1 131 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 172-45 903 ntGCF_036211925::NZ_JARMCN010000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span44 172-45 903 nt1 732 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 172 nt45 903 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS00770GCF_036211925#P4U41_RS00770
HKClassicCurrent focus
44 172-45 302 nt · Forward (+)
P4U41_RS00775GCF_036211925#P4U41_RS00775
RRNarL
45 304-45 903 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS00770The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2646437
Simplified PFAM architecture for HKOC_2646437
PFAM domain coverage: 300 / 376 aa (79.8%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[1-151] | HisKA_3[179-244] | HATPase_c[284-366]
- Domain count: 3
- Matched identifier: HKOC_2646437
- Positioned domains: DesK_N 1-151 ; HisKA_3 179-244 ; HATPase_c 284-366
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS00770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key