1 HAMP#1
53-122 aa · 70 aa · 19.1% of protein
Raw token
HAMP:53:0.0000000238:122:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS05010
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_036211925
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS05010Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 366 aa (62.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
149-212 aa · 64 aa · 17.5% of protein
Raw token
HisKA_3:149:6.18e-18:212:68:683 HATPase_c#3
249-341 aa · 93 aa · 25.4% of protein
Raw token
HATPase_c:249:0.0000000000001:341:108:109- Raw architecture: HAMP:53:0.0000000238:122:70:69#HisKA_3:149:6.18e-18:212:68:68#HATPase_c:249:0.0000000000001:341:108:109
- Domain description: 1 HAMP,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000006.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95174-96881Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_05005RefSeq proteinWP_327869312.1
Context group ID
GCF_036211925::NZ_JARMCN010000006.1::G00015Context members
P4U41_RS05010P4U41_RS05015
Partner locus tags
P4U41_RS05010P4U41_RS05015
Partner old locus tags
P4U41_05005P4U41_05010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327869312.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS05010Primary locus identifier stored in the genes table.
Old locus tagP4U41_05005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000006.1Sequence record reported by the local genomic context database.
Genomic interval95 174-96 274 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 174-96 881 ntGCF_036211925::NZ_JARMCN010000006.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000006.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000006.1All displayed genes belong to this local TCS context.
Neighborhood span95 174-96 881 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 174 nt96 881 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS05010GCF_036211925#P4U41_RS05010
HKClassicCurrent focus
95 174-96 274 nt · Forward (+)
P4U41_RS05015GCF_036211925#P4U41_RS05015
RRNarL
96 249-96 881 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS05010The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2716404
Simplified PFAM architecture for HKOC_2716404
PFAM domain coverage: 203 / 366 aa (55.5%)
1 aa366 aa
HAMPHisKA_3HATPase_c
- Simplified architecture: HAMP + HisKA_3 + HATPase_c
- Raw architecture: HAMP[74-122] | HisKA_3[149-211] | HATPase_c[250-340]
- Domain count: 3
- Matched identifier: HKOC_2716404
- Positioned domains: HAMP 74-122 ; HisKA_3 149-211 ; HATPase_c 250-340
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS05010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key